35 journal articles
2 book chapters
h-index:
21
Last updated: 2022-08-28
| Evolution of the recombination regulator PRDM9 in minke whales.
Damm E, Ullrich K, Amos WB, Odenthal-Hesse L BMC Genomics 23, 212. |
| Delayed differentiation of epidermal cells walls can underlie pedomorphosis in plants: the case of pedomorphic petals in the hummingbird-pollinated Caiophora hibiscifolia (Loasaceae, subfam. Loasoideae) species.
Strelin MM, Zattara EE, Ullrich K, Schallenberg-Rüdinger M, Rensing SA EvoDevo 13, 1. |
| Extensive variation in the intelectin gene family in laboratory and wild mouse strains.
Almaki F, Nonnecke EB, Castillo PA, Bevin-Holder A, Ullrich K, Lönnerdal B, Odenthal-Hesse L, Bevins CL, Hollox EJ Scientific Reports 11, 15548. |
| HAG1 and SWI3A/B control of male germ line development in P. patens suggests conservation of epigenetic reproductive control across land plants.
Genau AC, Li Z, Renzaglia KS, Fernandez‐Pozo N, Nogué F, Haas FB, Wilhelmsson PKI, Ullrich K, Schreiber M, Meyberg R, Grosche C, Rensing SA Plant Reproduction 34 (2), 149-173. |
| The mutational load in natural populations is significantly affected by high primary rates of retroposition
Zhang W, Xie C, Ullrich K, Zhang YE, Tautz D Proceedings of the National Academy of Sciences 118 (6), e2013043118. |
| The amylase gene cluster in house mice (Mus musculus) was subject to repeated introgression including the rescue of a pseudogene
Linnenbrink M, Ullrich KK, McConnell E, Tautz D BMC evolutionary biology 20, 1-11. |
| CRBHits: From Conditional Reciprocal Best Hits toCodon Alignments and Ka/Ks in R
Ullrich KK The Journal of Open Source Software 5 (55), . |
| Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines
Xie C, Bekpen C, Künzel S, Keshavarz M, Krebs-Wheaton R, Skrabar N, Ullrich KK, Zhang W, Tautz D PLoS computational biology 16 (11), e1008354. |
| PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
Fernandez‐Pozo N, Haas FB, Meyberg R, Ullrich KK, Hiss M, Perroud PF, Hanke S, Kratz V, Powell AF, Vesty EF, Daum CG, Zane M, Lipzen A, Sreedasyam A, Grimwood J, Coates JC, Barry K, Schmutz J, Mueller LA, Rensing SA The Plant Journal 102 (1), 165-177. |
| Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds
Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA BMC genomics 20 (1), 1-19. |
| Genomic Structure of Hstx2 Modifier of Prdm9-Dependent Hybrid Male Sterility in Mice
Lustyk D, Kinský S, Ullrich KK, Yancoskie M, Kašíková L, Gergelits V, Sedlacek R, Chan YF, Odenthal-Hesse L, Forejt J, Jansa P Genetics 213 (3), 1047-1063. |
| One thousand plant transcriptomes and the phylogenomics of green plants
Leebens-Mack JH, Barker MS, Carpenter EJ, Deyholos MK, Gitzendanner MA, Graham SW, Grosse I, Li Z, Melkonian M, Mirarab S, Porsch M, Quint M, Rensing SA, Soltis DE, Soltis PS, Stevenson DW, Ullrich KK, Wickett NJ, DeGironimo L, Edger PP, Jordon-Thaden IE, Joya S, Liu T, Melkonian B, Miles NW, Pokorny L, Quigley C, Thomas P, Villarreal JC, Augustin MM, Barrett MD, Baucom RS, Beerling DJ, Benstein RM, Biffin E, Brockington SF, Burge DO, Burris JN, Burris KP, Burtet-Sarramegna V, Caicedo AL, Cannon SB, Cebi Z, Chang Y, Chater C, Cheeseman JM, Chen T, Clarke ND, Clayton H, Covshoff S, Crandall-Stotler BJ, Cross H, dePamphilis CW, Der JP, Determann R, Dickson RC, Stilio VSD, Ellis S, Fast E, Feja N, Field KJ, Filatov DA, Finnegan PM, Floyd SK, Fogliani B, Garcia N, Gateble G, Godden GT, Goh FQY, Greiner S, Harkess A, Heaney JM, Helliwell KE, Heyduk K, Hibberd JM, Hodel RGJ, Hollingsworth PM, Johnson MTJ, Jost R, Joyce B, Kapralov MV, Kazamia E, Kellogg EA, Koch MA, Von Konrat M, Konyves K, Kutchan TM, Lam V, Larsson A, Leitch AR, Lentz R, Li FW, Lowe AJ, Ludwig M, Manos PS, Mavrodiev E, McCormick MK, McKain M, McLellan T, McNeal JR, Miller RE, Nelson MN, Peng Y, Ralph P, Real D, Riggins CW, Ruhsam M, Sage RF, Sakai AK, Scascitella M, Schilling EE, Schlosser EM, Sederoff H, Servick S, Sessa EB, Shaw AJ, Shaw SW, Sigel EM, Skema C, Smith AG, Smithson A, Stewart CN, Stinchcombe JR, Szovenyi P, Tate JA, Tiebel H, Trapnell D, Villegente M, Wang CN, Weller SG, Wenzel M, Weststrand S, Westwood JH, Whigham DF, Wu S, Wulff AS, Yang Y, Zhu D, Zhuang C, Zuidof J, Chase MW, Pires JC, Rothfels CJ, Yu J, Chen C, Chen L, Cheng S, Li J, Li R, Li X, Lu H, Ou Y, Sun X, Tan X, Tang J, Tian Z, Wang F, Wang J, Wei X, Xu X, Yan Z, Yang F, Zhong X, Zhou F, Zhu Y, Zhang Y, Ayyampalayam S, Barkman TJ, Nguyen N, Matasci N, Nelson DR, Sayyari E, Wafula EK, Walls RL, Warnow T, An H, Arrigo N, Baniaga AE, Galuska S, Jorgensen SA, Kidder TI, Kong H, Lu-Irving P, Marx HE, Qi X, Reardon CR, Sutherland BL, Tiley GP, Welles SR, Yu R, Zhan S, Gramzow L, Theißen G and Wong GKS Nature 574, 679–685. |
| Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)
Carpenter EJ, Matasci N, Ayyampalayam S, Wu S, Sun J, Yu J, Vieira FRJ, Bowler C, Dorrell RG, Gitzendanner MA, Li L, Du W, Ullrich KK, Wickett NJ, Barkmann TJ, Barker MS, Leebens-Mack JH, Wong GKS GigaScience 8 (10), giz126. |
| A de novo evolved gene in the house mouse regulates female pregnancy cycles
Xie C, Bekpen C, Künzel S, Keshavarz M, Krebs-Wheaton R, Skrabar N, Ullrich KK, Tautz D Elife 8, e44392. |
| A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource
Mosca E, Cruz F, Gómez-Garrido J, Bianco L, Rellstab C, Brodbeck S, Csilléry K, Fady B, Fladung M, Fussi B, Gömöry D, González-Martínez SC, Grivet D, Gut M, Hansen OK, Heer , Kaya Z, Krutovsky KV, Kersten B, Liepelt S, Opgenoorth L, Sperisen C, Ullrich KK, Vendramin GG, Westergren M, Ziegenhagen B, Alioto T, Gugerli F, Heinze B, Höhn M, Troggio M, Neale DB G3: Genes, Genomes, Genetics 9 (7), 2039-2049. |
| Aethionema arabicum: a novel model plant to study the light control of seed germination
Mérai Z, Graeber K, Wilhelmsson PKI, Ullrich KK, Arshad W, Grosche C, Tarkowská D, Turečková V, Strnad M, Rensing SA, Leubner-Metzger G, Scheid OM Journal of experimental botany 70 (12), 3313-3328. |
| Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover
Schmitz JF, Ullrich KK, Bornberg-Bauer E Nature ecology & evolution 2 (10), 1626-1632. |
| Detection of somatic epigenetic variation in Norway spruce via targeted bisulfite sequencing
Heer K, Ullrich KK, Hiss M, Liepelt S, Brüning RS, Zhou J, Opgenoorth L, Rensing SA Ecology and evolution 8 (19), 9672-9682. |
| The effect of auxin (indole-3-acetic acid) on the growth rate and tropism of the sporangiophore of Phycomyces blakesleeanus and identification of auxin-related genes
Živanović BD, Ullrich KK, Steffens B, Spasić SZ, Galland P Protoplasma 255 (5), 1331-1347. |
| The Chara genome: secondary complexity and implications for plant terrestrialization
Nishiyama T, Sakayama H, De Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA Cell 174 (2), 448-464. |
| The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon‐Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, de León IP, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA The Plant Journal 95 (1), 168-182. |
| The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution
Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Aguilar JCV, Widiez T, Wong GKS, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA The Plant Journal 93 (3), 515-533. |
| The sphagnome project: enabling ecological and evolutionary insights through a genus‐level sequencing project
Weston DJ, Turetsky MR, Johnson MG, Granath G, Lindo Z, Belyea LR, Rice SK, Hanson DT, Engelhardt KAM, Schmutz J, Dorrepaal E, Euskirchen ES, Stenøien HK, Szövényi P, Jackson M, Piatkowski BT, Muchero W, Norby RJ, Kostka JE, Glass JB, Rydin H, Limpens J, Tuittila ES, Ullrich KK, Carrell A, Benscoter BW, Chen JG, Oke TA, Nilsson MB, Ranjan P, Jacobson D, Lilleskov EA, Clymo RS, Shaw AJ New Phytologist 217 (1), 16-25. |
| Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward
Richards CL, Alonso C, Becker C, Bossdorf O, Bucher E, Colomé‐Tatché M, Durka W, Engelhardt J, Gaspar B, Gogol‐Döring A, Grosse I, van Gurp TP, Heer K, Kronholm I, Lampei C, Latzel V, Mirouze M, Opgenoorth L, Paun O, Prohaska SJ, Rensing SA, Stadler PF, Trucchi E, Ullrich K, Verhoeven KJF Ecology letters 20 (12), 1576-1590. |
| Comprehensive genome-wide classification reveals that many plant-specific transcription factors evolved in streptophyte algae
Wilhelmsson PKI, Mühlich C, Ullrich KK, Rensing SA Genome biology and evolution 9 (12), 3384-3397. |
| Combination of the endogenous lhcsr1 promoter and codon usage optimization boosts protein expression in the moss Physcomitrella patens
Hiss M, Schneider L, Grosche C, Barth MA, Neu C, Symeonidi A, Ullrich KK, Perroud PF, Schallenberg-Rüdinger M, Rensing SA Frontiers in plant science 8, 1842. |
| Protoplast swelling and hypocotyl growth depend on different auxin signaling pathways
Dahlke RI, Fraas S, Ullrich KK, Heinemann K, Romeiks M, Rickmeyer T, Klebe G, Palme K, Lüthen H, Steffens B Plant physiology 175 (2), 982-994. |
| Selfing in Haploid Plants and Efficacy of Selection: Codon Usage Bias in the Model Moss Physcomitrella patens
Szövényi P, Ullrich KK, Rensing SA, Lang D, van Gessel N, Stenøien HK, Conti E, Reski R Genome biology and evolution 9 (6), 1528-1546. |
| Sexual reproduction, sporophyte development and molecular variation in the model moss Physcomitrella patens: introducing the ecotype Reute
Hiss M, Meyberg R, Westermann J, Haas FB, Schneider L, Schallenberg‐Rüdinger M, Ullrich KK, Rensing SA The Plant Journal 90 (3), 606-620. |
| Detection of SNPs based on transcriptome sequencing in Norway spruce (Picea abies (L.) Karst)
Heer K, Ullrich KK, Liepelt L, Rensing SA, Zhou J, Ziegenhagen B, Opgenoorth L Conservation Genetics Resources 8 (2), 105-107. |
| Evidence of divergent selection for drought and cold tolerance at landscape and local scales in Abies alba Mill. in the French Mediterranean Alps
Roschanski AM, Csilléry K, Liepelt S, Oddou‐Muratorio S, Ziegenhagen B, Huard F, Ullrich KK, Postolache D, Vendramin GG, Fady B Molecular Ecology 25 (3), 776-794. |
| Natural variants of ELF3 affect thermomorphogenesis by transcriptionally modulating PIF4-dependent auxin response genes
Raschke A, Ibañez C, Ullrich KK, Anwer MU, Becker S, Glöckner A, Trenner J, Denk K, Saal B, Sun X, Ni M, Davis SJ, Delker C, Quint M BMC plant biology 15 (1), 1-10. |
| Means to optimize protein expression in transgenic plants
Ullrich KK, Hiss M, Rensing SA Current opinion in biotechnology 32, 61-67. |
| Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation
Ranjan A, Dickopf S, Ullrich KK, Rensing SA, U Hoecker BMC plant biology 14 (1), 1-15. |
| Optimized probe masking for comparative transcriptomics of closely related species
Poeschl Y, Delker C, Trenner J, Ullrich KK, Quint M, Grosse I PloS one 8 (11), e78497. |
| Toward a comprehensive phylogenetic reconstruction of the evolutionary history of mitogen-activated protein kinases in the plant kingdom
Janitza P, Ullrich KK, Quint M Frontiers in plant science 3, 271. |
| A transcriptomic hourglass in plant embryogenesis
Quint M, Drost HG, Gabel A, Ullrich KK, Bönn M, Grosse I Nature 490 (7418), 98-101. |
| Molecular evolution and selection patterns of plant F-box proteins with C-terminal kelch repeats
Schumann N, Navarro-Quezada A, Ullrich K, Kuhl C, Quint M Plant physiology 155 (2), 835-850. |
| Natural variation of transcriptional auxin response networks in Arabidopsis thaliana
Delker C, Pöschl Y, Raschke A, Ullrich K, Ettingshausen E, Hauptmann V, Grosse I, Quint M The Plant Cell 22 (7), 2184-2200. |
| The genome of the model moss Physcomitrella patens
Lang D, Van Gessel N, Ullrich KK, Reski R Advances in botanical research 78 (2016), 97-140. |
| Population genomics of the house mouse and the Brown rat
Ullrich KK, Tautz D Statistical Population Genomics (2020), 435-452. |