Coding

Several years programming experience in and .

Data Analysis / HPC

Deep knowledge about bioinformatic software use-cases. Including parallelization and big data analysis on HPC.

Consulting

Project-based consulting to support scientists purchasing hardware, coordinate data management (FAIR principles), guide/document data analysis and wrap-up results for publication.

My research is about "omics" data not restricted to any kingdom in the tree of life. Seeing my research as a tree, the tips would represent population genomics, the branches would represent comparative genomics and the nodes evolution. Anyhow, almost always the projects are linked to phylogenomics and "big data" analysis to highlight natural variation.

Species Trees

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Population genomics

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Gene age

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Repositories

Source code and useful scripts for bioinformatic projects.

CRBHits

CRBHits is a reimplementation of the Conditional Reciprocal Best Hit algorithm crb-blast in R. It covers all necessary steps from CRBHit pair calculation to Codon Alignments and Ka/Ks.

Training

Notes and some examples how to use and for population genomics and phylogeny.

RootDetection

RootDetection is an automated tool for evaluating photographs of plant roots. It detects single strand roots, traces their paths and measures the resulting lengths - completely automatic..